PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_FDFCBA57D1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 275aa    MW: 30629.9 Da    PI: 6.1805
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_FDFCBA57D1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161562148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT++Ed+ll+ +v+q G g+W+++a+  g++R++k+c++rw +yl
  Traes_6DL_FDFCBA57D1.1 15 KGPWTAQEDKLLLGYVRQQGDGRWNSVAKLTGLKRSGKSCRLRWVNYL 62
                            79********************************************97 PP

2Myb_DNA-binding513.3e-1668112147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ T++E+  ++++++++G++ W+tIar ++ gRt++++k++w+++
  Traes_6DL_FDFCBA57D1.1  68 RGKITPQEESVILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112
                             8999******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9111062IPR017930Myb domain
SuperFamilySSF466895.24E-2913109IPR009057Homeodomain-like
SMARTSM007172.4E-131464IPR001005SANT/Myb domain
PfamPF002498.0E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-231669IPR009057Homeodomain-like
CDDcd001672.93E-101762No hitNo description
PROSITE profilePS5129424.93363117IPR017930Myb domain
SMARTSM007174.5E-1567115IPR001005SANT/Myb domain
PfamPF002495.8E-1468112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-2470115IPR009057Homeodomain-like
CDDcd001671.69E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEQFGWGREE GGWRKGPWTA QEDKLLLGYV RQQGDGRWNS VAKLTGLKRS GKSCRLRWVN  60
YLRPDLKRGK ITPQEESVIL ELHALWGNRW STIARSLPGR TDNEIKNYWR THFKKGKPSS  120
KNIERARARF LKQRREIMQG HHEHQRDVQD DDGAATADNT GGGAASHHAD EATTRPAPPP  180
AQDDDDLAMM RDMADMDEFL QYDHHPMSMS AYFLLDGGDG AASDAGSSGE ITTCGATWGS  240
LWNLDDVDVV DDVGGGGACG WGSFALLQDH GLAFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25151157106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0992831e-143AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence.
GenBankAK1118071e-143AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572719.11e-121PREDICTED: myb-related protein Zm38
TrEMBLW5H1610.0W5H161_WHEAT; Uncharacterized protein
STRINGMLOC_6786.11e-163(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-65myb domain protein 79
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]